Archaeobotanical Analysis: Principles 
        and Methods 
      by Karen R. Adams 
      Introduction 
        Sample Types 
        General Principles and Conventions 
           Charred vs. Noncharred Remains 
           Wood Charcoal vs. Charred Nonwood 
        Specimens 
           Naming Conventions 
        Methods 
           Macrofossils 
              Wood Charcoal 
              Charred Nonwood 
        Specimens 
              Modified Vegetal 
        Items 
           Microfossils: Flotation Samples 
              Processing 
              Subsampling for 
        Wood Charcoal 
              Subsampling for 
        Charred Nonwood Specimens 
              Examination and 
        Identification 
              Indices 
        Additional Resources 
        References Cited 
        To Cite This Publication 
       
      Introduction
      1 
        Archaeologists collect ancient plant remains in an effort to understand 
        prehistoric plant use by the inhabitants of a site or locale and to reconstruct 
        the nature and composition of vegetation communities that existed in the 
        past. Plant remains collected from archaeological contexts provide information 
        about both wild and domesticated plant resources used for food, fuel, 
        construction, and other purposes. Because people generally used resources 
        that were available locally, plant assemblages can also provide important 
        clues about the characteristics of the natural vegetation that formerly 
        grew in the vicinity of sites. Under certain circumstances, data derived 
        from ancient plant assemblages can also provide insights into seasonality 
        of site use and abandonment, paleoenvironmental conditions, and human 
        nutrition and health; this is especially true when the plant data are 
        evaluated in conjunction with other kinds of evidence, including pollen, 
        tree-ring, faunal, and human osteological data. 
      2 
        The purpose of this publication is to describe for researchers 
        and other interested readers the types of archaeobotanical samples collected 
        by the Crow Canyon Archaeological Center and the methods used to process 
        and analyze them.1 This information should 
        allow others to evaluate not only the methods employed, but also the data 
        obtained as a resultdata which are reported in detail in The 
        Crow Canyon Archaeological Center Research Database and in individual 
        chapters in Crow Canyon's series of on-line 
        site reports.2 Although this publication 
        is designed primarily as a companion piece to the site reports, researchers 
        and students might find the information contained herein useful in guiding 
        their own studies as well. 
      3 
        This publication deals with plant remains collected as individual 
        vegetal specimens and plant remains recovered in flotation samples. It 
        does not deal with pieces of wood collected as tree-ring samples, which 
        are processed and analyzed by the Laboratory 
        of Tree-Ring Research in Tucson, Arizona, or with pollen samples, 
        which are processed and analyzed by various independent contractors. For 
        a description of how tree-ring and pollen samples are collected in the 
        field, refer to Crow Canyon's on-line field 
        manual. 
      Sample Types
      4 
        The plant remains collected from sites excavated by the Crow Canyon 
        Archaeological Center fall into one of two broad categories depending 
        on their size and the method used to collect them. Macrofossils are pieces of plants that are large enough to be seen with the unaided 
        eye and that are retrieved by hand during the excavation and screening 
        of sediment in the field. The majority of macrofossils are submitted to 
        the laboratory as vegetal specimens (data-entry code: VEG), and most often 
        they consist of pieces of wood charcoal, although corn cobs, squash seeds, 
        and other large, distinctive plant remains are occasionally collected 
        as well. Also included in this category are plant materials that were 
        intentionally modified into tools, containers, or other serviceable items; 
        these are submitted to the laboratory as basketry (BAS), textile (TEX), 
        or "other modified vegetal" (OMV) specimens. Macrofossil remains constitute 
        a subjective sample of the contents of a given deposit, because collection 
        depends on what an individual excavator decides to retrieve. For example, 
        all modified vegetal specimens recognized in the field are collected, 
        but it is impractical for excavators to retrieve every piece of wood charcoal 
        observed in the course of digging a burned structure. 
      5 
        Microfossils are tiny pieces of plant material recovered 
        specifically in flotation samples (data-entry code: FLO). Small seeds, 
        fruits, and other reproductive parts make up the majority of items in 
        this category, but tiny fragments of wood and other plant parts may be 
        recovered as well.3 Flotation samples consist 
        of a standard volume of sediment (usually 1 liter), and they are routinely 
        collected from contexts where plant remains are expected or perceived 
        to be plentiful. These contexts include primary refuse (for example, ash 
        in thermal features), secondary refuse (middens and trash fill in structures), 
        collapsed structure roofs ("roof fall"), and other cultural deposits. 
        Because they are collected and processed systematically, flotation samples 
        provide relatively unbiased data about prehistoric plant use at a site. 
        For a more detailed discussion of when and how flotation samples are collected 
        at sites excavated by Crow Canyon, refer to the field 
        manual. 
      General Principles and Conventions
      Charred vs. Noncharred Remains
      6 
        Both charred and noncharred plant remains are recovered from sites 
        excavated by the Crow Canyon Archaeological Center. Charring is usually 
        considered to be the result of prehistoric cultural activities; noncharred 
        remains are more likely to be modern or to have been introduced through 
        natural processes such as rodent activity and wind (Minnis 
        1981*1:147). Therefore, most often only charred (including partly 
        charred) materials are considered in analyses of Crow Canyon archaeobotanical 
        assemblages; the presence of noncharred specimens is noted, but these 
        items are not usually included in assessments of prehistoric plant use. 
        There are exceptions to this rule, however, and every instance is considered 
        on a case-by-case basis. For example, the recovery of a single charred 
        domesticated wheat (Triticum) grain from Troy's Tower (Site 5MT3951), 
        a Pueblo III site tested by Crow Canyon (Varien 
        1999*10), can be explained by the fact that in modern times wheat 
        stubble had been burned in the agricultural field in which the site is 
        located (Adams 1999*3). On 
        the other hand, the recovery of a noncharred gourd container from Sand 
        Canyon Pueblo (Site 5MT765), another Pueblo III site excavated by Crow 
        Canyon, clearly is a case of extraordinary preservation of a prehistoric 
        artifact (Adams 2000*1). 
      Wood Charcoal vs. Charred Nonwood Specimens
      7 
        Charcoal is defined as any "dark or black porous carbon prepared 
        from vegetable or animal substances" (Merriam-Webster 
        1996*1:192). Most archaeobotanists, however, restrict the use of the 
        word "charcoal" to describe burned wood specificallythat is, charred 
        pieces of trunks, branches, and twigs from both trees and shrubs. The 
        charred remains of the nonwoody parts of trees and shrubs (for example, 
        fruits and seeds) and the charred remains of nonwoody plants (herbaceous 
        perennials and grasses) are generally not described as charcoal, even 
        though they, too, clearly fall under the strict definition. Instead, such 
        specimens are usually referred to in more-specific descriptive terms, 
        such as "reproductive" or "vegetative" parts, without continued reference 
        to their charred condition. Because of the potential for confusion, especially 
        among readers who are not archaeobotanists, I have begun referring to 
        the two categories as "wood charcoal" and "charred nonwood specimens." 
        This convention should make clear that plant remains in both categories 
        are burned, but it also preserves the custom with regard to the use of 
        the word "charcoal" that has established itself in the archaeobotanical 
        literature. 
      Naming Conventions
      8 
        Because many plants are known by multiple common names, which vary 
        according to geographic region and local custom, the only consistent and 
        reliable means of reporting data is to use standard scientific nomenclature. 
        Therefore, in all Crow Canyon site reports, plants are referred to first 
        by their scientific names, then by their common names. The latter are 
        provided either parenthetically in text or in tables showing the correspondence 
        between scientific and common names. Once the correspondence has been 
        established in a given publication, both scientific and common names are 
        often used interchangeably, depending on the context. The taxonomic nomenclature 
        (both scientific and common names) used in Crow Canyon publications conforms 
        to A Utah Flora (Welsh 
        et al. 1987*1) whenever possible. 
      9 
        When a specimen is identified by a combination of two genus namesfor 
        example, "Amelanchier/Peraphyllum" or "Prunus/Rosa"it 
        means that the specimen could be a member of either of the named genera 
        and that a more precise determination was not possible. The order in which 
        the names appear does not indicate which genus identification is most 
        likely correct; the names are simply listed alphabetically. Some specimens 
        in a given sample are identified to the genus level; others in the same 
        sample may be identified to both the genus and species levels. This occurs 
        because some specimens are better preserved than others. For interpretive 
        purposes, these items most often would be combined at the broadest level 
        of identification (see discussion of taxon diversity, paragraph 
        28). 
      10 
        One special case involving the identification of plant remains 
        to two possible genera requires explanation. Archaeobotanists use the 
        common name "cheno-am" (lowercase) to refer to seeds that could be from 
        plants in either the genus Chenopodium or the genus Amaranthus. Palynologists, on the other hand, use "Cheno-am" (uppercase) to refer 
        to pollen grains that could be from either the family Chenopodiaceae or 
        the genus Amaranthus. Except for the difference in capitalization, 
        there is no obvious clue that the definition used by archaeobotanists 
        is somewhat narrower than that used by palynologists. 
      11 
        The taxonomic level to which any given specimen is identified depends 
        on a number of factors, including the "comfort level" of the individual 
        analyst, the condition of the specimen, and whether or not other similar-appearing 
        items are known from the region. (Only angiosperms, or flowering plants, 
        are identified to the subclass levelthat is, identified as Monocotyledons 
        or Dicotyledons.) Following Bohrer 
        and Adams (1977*1:41), analysts indicate one of three levels of confidence 
        for each identification: "absolute," "-type," or "compares favorably." 
        An "absolute" identification to the level of species indicates that all 
        species of the relevant genus in the local environment have been examined, 
        and the specimen in question appears identical to the named species. The 
        label "-type" signifies that the specimen has morphological characteristics 
        that closely resemble those of the named species, but that other plants 
        in the area might also have similar-looking parts. "Compares favorably" 
        (abbreviated "cf.") is used when a specimen is difficult to identify because 
        of poor preservation or some other factor, but its characteristics suggest 
        that it is more likely to be of the named species than of some other species; 
        the use of this abbreviation indicates a "best guess" assessment. Although 
        species is the taxonomic category used in the foregoing explanations, 
        the three qualifiers can be used for identifications to any taxonomic 
        level. In Crow Canyon reports, analytic confidence is indicated in tables 
        by the inclusion of either "cf." or "-type" preceding or following the 
        scientific name (for example, cf. Pinus or Pinus-type). 
        Scientific names that do not include either of these qualifiers should 
        be assumed to indicate "absolute" identifications (for example, Zea 
        mays refers to a positive identification to this species). Including 
        qualifiers every time a scientific name is mentioned in a discussion, 
        however, would be cumbersome; for that reason, they are generally omitted 
        from text. Readers should refer to the tables that accompany the text 
        if they wish to know the level of confidence of a given taxonomic identification. 
      12 
        In cases in which a prehistoric specimen cannot be assigned to 
        a specific taxonomic category, the item is recorded as "unknown." If similar 
        or identical specimens are found with some frequency, additional efforts 
        at identification are made. If those efforts fail, the "unknown" is described 
        in terms of its key morphological and anatomical features. If recognized, 
        nonbotanical materials such as bone, coal, termite fecal pellets, insect 
        parts, gastropods, and "black spherical bodies" are recorded as present 
        in samples. 
      Methods
      Macrofossils
      Wood Charcoal
      13 
        Charred wood preserves well in archaeological contexts because 
        it is more resistant than noncharred wood to decay and insect damage. 
        Some specimens even retain an outer layer of bark, although most do not. 
        Identification of wood charcoal in archaeological assemblages can provide 
        valuable information about the types of wood used for fuel and in construction. 
      Subsampling
      14 
        Because wood charcoal is usually plentiful in archaeological contexts, 
        economy dictates that only a subsample of all the specimens submitted 
        be examined. The first step in analyzing wood charcoal is to pour the 
        entire contents of a given bag of plant material (which may contain both 
        wood and nonwood vegetal specimens) onto newspaper or a lab tray so that 
        each individual item is visible. The analyst then attempts to select an 
        unbiased subsample of 20 pieces of wood charcoal by choosing specimens 
        of different sizes and retrieving items from different sections of the 
        newspaper or lab tray. If fewer than 20 pieces of charred wood are present, 
        all are examined; if more than 20 pieces are present, additional specimens 
        that appear morphologically distinctive to the naked eye are examined 
        after the first set of 20 has been analyzed. 
      Examination
      15 
        Each piece of wood charcoal is snapped in half so that a fresh 
        transverse (cross) section is exposed. This section is then examined under 
        a dissecting binocular microscope at magnifications of 10 to 45X. Often 
        the pieces are placed in a sand-filled petri dish to stabilize them for 
        ease of viewing. 
      Identification
      16 
        Each piece of wood charcoal examined is identified to the finest 
        of four possible taxonomic levels, listed here from most general to most 
        specific: subclass, family, genus, and species. Wood charcoal identifications 
        are based on anatomical traits (for example, rings, vessels, rays, and 
        background patterning) viewed in cross section. Ancient wood charcoal 
        is identified using Crow Canyon's modern wood charcoal comparative collection 
        from the region, backed by plant voucher specimens in the University of 
        Arizona herbarium in Tucson. Because of similarities among woods of some 
        plant families or genera in the region, more wood types may be present 
        in Crow Canyon archaeological assemblages than are actually indicated 
        in the data summaries. For example, wood identified as Pinus may 
        be either Pinus edulis or Pinus ponderosa. The identification 
        criteria used in the analysis of wood charcoal collected from sites excavated 
        by Crow Canyon are described in detail in Plant 
        Identification Criteria, an on-line resource for researchers. 
      Charred Nonwood Specimens
      17 
        Nonwood plant specimens include both agricultural and wild resources, 
        and they usually consist of reproductive parts such as seeds or fruit. 
        Excavators collect recognizable pieces of domesticates, such as maize 
        (Zea mays) cobs and kernels, squash (Cucurbita) seeds and 
        rinds, and bean (Phaseolus) seeds. They also collect pinyon (Pinus 
        edulis) nutshells, yucca (Yucca baccata) fruits and seeds, 
        and a wide variety of other wild plant parts, including such vegetative 
        parts as leaves, stalks, and roots. 
      Examination
      18 
        All charred nonwood specimens are removed from bags of macrofossils 
        whose contents have been thinly spread out on newspaper or a lab tray 
        so that all specimens are visible. Each item is examined under a dissecting 
        binocular microscope (10 to 45X) and, if possible, identified. The nonwood 
        materials are bagged and labeled separately from the wood charcoal found 
        in the same sample.  
      Identification
      19 
        The identification criteria for reproductive plant parts include 
        size, shape, surface texture, and points of attachment. Seeds are identified 
        using the author's modern comparative collection, backed by University 
        of Arizona herbarium voucher specimens. Reference texts, such as Delorit 
        (1970*1), Landers and Johnson 
        (1976*1), and Martin and 
        Barkley (1961*1), are also used. Vegetative parts such as leaves and 
        stems are identified on the basis of internal anatomy and morphology. 
        If an item cannot be identified by reference to the collections or texts, 
        it is measured and described as an "unknown." 
      Modified Vegetal Items
      20 
        Plant materials were sometimes modified (cut, split, woven, or 
        otherwise shaped) in order to fashion them into various utilitarian or 
        decorative items, such as baskets or other containers, mats, plaques, 
        sandals, and tools. These itemswhole and fragmentary, charred and 
        noncharredoccasionally preserve in archaeological deposits and, 
        when intact enough to be recognized in the field, are collected as macrofossil 
        specimens. Because of their generally fragile condition, special care 
        is used in handling them during excavation, processing, and analysis. 
      Examination
      21 
        Modified vegetal artifacts are fully described both quantitatively 
        (measured, counted) and qualitatively (text descriptions). Microscope 
        examination is sometimes required to determine the anatomical details 
        of the constituent elements. Very rarely, small portions of the items 
        are broken off to expose fresh transverse (cross) sections. 
      Identification
      22 
        The identification conventions cited above for wood charcoal and 
        charred nonwood specimens (see paragraph 16 and paragraph 19) are also applied to modified vegetal 
        items. The raw materials of construction are identified to the most specific 
        taxonomic level possible. Although many modified vegetal items are constructed 
        of a single plant or plant part, some are made up of more than one plant 
        or plant part. In such cases, each of the constituent elements is identified 
        and described, if possible. The terminology used to describe modified 
        items as artifacts conforms to conventions published by specialists familiar 
        with each type of artifact.  
      Microfossils: Flotation Samples
      Processing
      23 
        The steps used to process flotation samples are outlined in detail 
        in the on-line laboratory 
        manual, but the procedure basically involves placing an individual 
        sample in a bucket, adding water, then gently stirring the mixture to 
        free the organic materials. The inorganic material that settles to the 
        bottom of the bucket constitutes the "heavy fraction," which is collected, 
        allowed to dry, and stored. Charred and noncharred plant remains that 
        float to the surface are poured into a fine (0.355-mm) mesh to be captured 
        as the "light fraction." The light fraction is allowed to dry before being 
        sifted through a series of geologic sieves. This process separates the 
        light (organic) fraction into 4.75-mm, 2.80-mm, 1.40-mm, 0.71-mm, and 
        0.25-mm subsamples, which are then individually bagged and labeled. Although 
        the size of the original mesh used to capture the entire light fraction 
        (0.355 mm) is larger than the finest mesh used to create the subsamples 
        (0.25 mm), smaller particles that adhere to larger particles when they 
        are wet can detach as the residue dries and be caught in the 0.25-mm screen 
        used during dry screening. Plant remains also continue to break into smaller 
        pieces whenever a sample is handled. 
      Subsampling for Wood Charcoal
      24 
        Analysts examine the flotation light fraction in two steps, using 
        a dissecting binocular light microscope at magnifications ranging from 
        10 to 45X. The first step involves subsampling the wood charcoal. The 
        analyst begins by choosing 20 pieces of wood (using the method described 
        in paragraph 14) from the 4.75-mm portion, because 
        the large size of the individual specimens allows for more-confident identification. 
        If the 4.75-mm portion does not contain 20 pieces of wood, some of the 
        larger specimens in the 2.80-mm portion are selected to achieve the goal 
        of examining 20 pieces total. After the initial subsample of 20 pieces 
        is analyzed, additional pieces that appear morphologically distinctive 
        to the unaided eye are also examined and identified. 
      Subsampling for Charred Nonwood Specimens
      25 
        The second step in analyzing plant remains from flotation samples 
        involves looking for nonwood remains such as seeds, fruit, other reproductive 
        structures, and nonwood vegetative parts. Samples less than 50 ml in total 
        light-fraction volume are analyzed completely. For samples with light 
        fractions that measure 50 ml or more, the following protocol applies: 
        The 4.75- and 2.80-mm portions are completely examined under the microscope 
        for seeds and for other reproductive and vegetative parts. An approach 
        known as the "species area curve" (Mueller-Dombois 
        and Ellenberg 1974*1:5253) is then used to subsample the 1.40- 
        and 0.71-mm portions. This approach maximizes the number of taxa recorded 
        while minimizing the volume of sample sorted (Adams 
        1993*1:196). The goal is to identify the maximum number of taxa represented 
        in a sample, rather than to record the total number of whole or fragmented 
        items of each taxon. The 1.40- and 0.71-mm portions are sorted in increments 
        of 0.90 ml. Each subsample of 0.90 ml is measured with a graduated cylinder. 
        No new taxa must be identified in three successive 0.90-ml subsamples 
        for the sample sieve size to be considered completely analyzed. If remains 
        of new taxa are observed, then an additional three 0.90-ml subsamples 
        are examined until no new taxa are identified. In a similar manner, the 
        portion captured in the 0.25-mm screen is sorted in increments of 0.30 
        ml, again using the species-area-curve approach. Materials that pass through 
        the 0.25-mm screen are not examined, because seeds of this size are usually 
        also preserved in screens with larger mesh sizes and because fragmented 
        items of this size are extremely difficult to identify. 
      Examination and Identification
      26 
        The conventions cited above for examining and identifying macrofossils 
        (paragraph 16 and paragraph 
        19) also apply to items recovered in flotation samples. 
      Indices
      Taxon Ubiquity
      27 
        Taxon ubiquity, that is, the number of samples in which the remains 
        of plants of a given taxon occur within a total universe of samples analyzed, 
        provides insight into the frequency of use of a plant resource in prehistory. 
        Ubiquity is calculated for flotation samples only, and the measure is 
        expressed as a percentage. To calculate ubiquity for a given taxon, the 
        site or other sample set of interest must first be selected, then the 
        number of flotation samples in which plant parts of the given taxon occur 
        is counted. This number is divided by the total number of flotation samples 
        analyzed for the site or sample set, and the resulting figure is converted 
        to a percentage. For example, the presence of cheno-am seeds in six of 
        15 analyzed flotation samples would constitute a ubiquity of 40 percent. 
        From this, it would be inferred that cheno-ams were a commonly used resource. 
        Sterile and nonproductive samplesthat is, flotation samples that 
        yield no botanical remains and samples that yield only unidentifiable 
        botanical remainsare included in the total number of samples analyzed. 
      Taxon Diversity
      28 
        In any given sample set, and even within individual flotation samples, 
        there may be items identified to similar, but not identical, taxonomic 
        levels. When assessing taxonomic diversity within a given sample, analysts 
        at Crow Canyon take a conservative approach and combine certain records 
        for the purpose of counting the number of different taxa represented. 
        For example, if a flotation sample contains both Artemisia tridentatatype 
        wood charcoal and Artemisia-type wood charcoal, the two taxonomic 
        levels are combined and considered to represent only a single taxon (Artemisia) 
        for the purpose of determining the diversity of potential wood types in 
        the sample. A single taxon represented by more than one plant part may 
        be handled slightly differently, however, depending on the parts present 
        and the types of prehistoric uses they are believed to represent. For 
        example, Pinus-type bark scales, wood charcoal, and cone scales 
        identified in a single flotation sample would be counted as a single taxon 
        because all are believed to represent the use of pine for fuel. However, 
        if Pinus-type nutshell fragments were identified in the same sample, 
        they would be counted independently in discussions of food taxa because 
        they are believed to represent the use of pine for food. 
      Taxon Density
      29 
        Archaeobotanists often calculate the number of plant parts per 
        unit of sediment volume examinedfor example, the number of juniper 
        seeds per liter of flotation sample. Taxon density is not calculated for 
        Crow Canyon samples, because not all examples of each taxon/part combination 
        within each sample are identified or counted, and only rarely are samples 
        examined in their entirety. As stated earlier, the goal when analyzing 
        flotation samples from Crow Canyon sites is to identify the maximum number 
        of taxa represented in a sample, not to record the total number of whole 
        or fragmented specimens of each taxon/part combination that is present. 
      Additional Resources
      30 
        A number of additional resources available on Crow Canyon's Web 
        site supplement the information presented in this document: 
      
        - Ethnographic 
          Uses of Plants: This database lists historic uses of all plant 
          parts identified in plant assemblages from sites excavated by the Crow 
          Canyon Archaeological Center. Full references to the primary ethnographic 
          literature are provided.
 
        - Plant 
          Identification Criteria: This document details all metric and 
          nonmetric data relevant to the identification of all taxa and plant 
          parts in assemblages from sites excavated by Crow Canyon. Descriptions 
          of selected taxa are accompanied by photographs, most of them taken 
          through the microscope.
 
        - The 
          Crow Canyon Archaeological Center Research Database: This large 
          database includes data for all analyzed archaeobotanical samples and 
          specimens collected at sites investigated by Crow Canyon.
 
       
       
      1Archaeobotanical samples and specimens 
        are collected by Crow Canyon archaeologists and participants in the Center's 
        research and education programs. The materials are processed and analyzed 
        by both the author and numerous student interns working under the author's 
        supervision.  
      2Five on-line chapters (Adams 
        1999*3; Adams and Brown 2000*1; Bowyer and Adams 2004*1; Murray and Jackman-Craig 2003*1; Rainey and Jezik 2002*1), 
        as well as one chapter published in traditional print form (Adams 
        1993*1), also include descriptions of the methods used to process 
        samples and analyze plant remains. The methods described in these earlier 
        publications document the gradual refinement of the procedures used at 
        Crow Canyon, culminating in the protocol described in the current document.  
      3Pollen grains, which are not visible to 
        the naked eye, constitute a distinctive category of plant remains subject 
        to specialized sampling, processing, and analysis techniques. Although 
        pollen data are sometimes presented and discussed in Crow Canyon publications, 
        those data are provided by independent palynological consultants, whose 
        methods are described in their individual reports.  
       
      Karen R. Adams (Ph.D., University of Arizona, 
        1988) is an independent consultant in archaeobotany with more than 30 
        years of experience in the American Southwest and northern Mexico. 
       
      To cite this publication: 
      Adams, Karen R. 
        2004 Archaeobotanical Analysis: Principles and Methods [HTML Title]. 
        Available: https://www.crowcanyon.org/plantmethods. Date of use: day month 
        year.*  
      *Example: Date of use: 26 November 2004.   |